There is a similar problem in the theory of evolution. According to the theory of evolution there should be a gradual development of one animal into another. But there are conspicuous gaps between various types of animals in the fossil record, without the expected intermediate forms. There are, of course, variations among related forms, but there are variations among related forms today. It is not surprising there was more variation in the past, as there were a greater variety of creatures that existed in the past. Nor is it surprising that, with this greater variety of creatures, you would occasionally meet something that looks like a transition between two other creatures. But if evolution were true you would expect this to be a regular thing. So there is the adding of epicycles by positing new theories such as the punctuated equilibrium or hopeful monster theories to explain the lack of evidence. But if you need new theories to explain the lack of evidence, there is a problem with your theory.
Darwin thought acquired traits could be inherited. Then came Mendel and contradicted this. The way around this was to appeal to genetic mutation. A mutation is an error in the genetic code. How often does an error produce something useful? Sometimes, but very rarely. All the experiments to show major change brought about by mutation have failed. Also, it is still popularly claimed that the fact the embryo in the womb recapitulates its previous forms proves evolution. This is not only questionable scientifically, but is based on an understanding of evolution no longer held. Why should an embryo recapitulate its previous mutations. More epicycles. Or take the complexity of life even on the cellular level. The cell is a small factory. How could such a thing come together by chance? There is not even currently a good epicycle to explain this. Yet with all the epicycles, people refuse to reconsider the theory. Perhaps it is time to do so.
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